Article

A Scalable Algorithm for Structure Identification of Complex Gene Regulatory Network from Temporal Expression Data

2016-09-04

Abstract excerpt

<h4>Motivation</h4> Gene regulatory interactions are of fundamental importance to various biological functions and processes. However, only a few previous computational studies have claimed success in revealing genome-wide regulatory landscapes from temporal gene expression data, especially for complex eukaryotes like human. Moreover, recent work suggests that these methods still suffer from the curse of dimensio...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: e922bdd5-db51-52d1-be9d-6de3c792a283
DOI: 10.1101/073296

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

A Scalable Algorithm for Structure Identification of Complex Gene Regulatory Network from Temporal Expression DataDOI 10.1101/073296Read

Parallel Framework for Inferring Genome Scale Gene Regulatory NetworksSemantic proximity Read

Structure Learning for Hierarchical Regulatory NetworksSemantic proximity Read

A Quantitative Evaluation of Topological Motifs and Their Coupling in Gene Circuit State DistributionsSemantic proximity Read

Approximate inference of gene regulatory network models from RNA-Seq time series dataSemantic proximity Read

DANSE: a pipeline for dynamic modelling of time-series multi-omics dataSemantic proximity Read

fastBMA: Scalable Network Inference and Transitive ReductionSemantic proximity Read

SINCERITIES: Inferring gene regulatory networks from time-stamped single cell transcriptional expression profilesSemantic proximity Read

Optimal transport reveals dynamic gene regulatory networks via gene velocity estimationSemantic proximity Read

GIMLET: Identifying Biological Modulators in Context-Specific Gene Regulation Using Local Energy StatisticsSemantic proximity Read

Dynamic Network Analysis of the 4D NucleomeSemantic proximity Read

A prior-based integrative framework for functional transcriptional regulatory network inference.Semantic proximity Read

LASSIM - a network inference toolbox for genome-wide mechanistic modelingSemantic proximity Read