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SNAPPy: a snakemake pipeline for scalable HIV-1 subtyping by phylogenetic pairing

2019-08-05

Abstract excerpt

Human immunodeficiency virus 1 (HIV-1) genome sequencing is routinely done for drug resistance monitoring in hospitals worldwide. Subtyping these extensive datasets of HIV-1 sequences is a critical first step in molecular epidemiology and surveillance studies. The clinical relevance of HIV-1 subtypes is increasingly recognized. Several studies suggest subtype-related differences in disease progression, transmissio...

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Literature Corpus work
cf4d8a75-a725-5bc6-9350-b16e42c93b1e
DOI
10.1101/725838
Open publication

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SNAPPy: a snakemake pipeline for scalable HIV-1 subtyping by phylogenetic pairingDOI 10.1101/725838
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