Article

An open-source <i>k</i> -mer based machine learning tool for fast and accurate subtyping of HIV-1 genomes

2018-07-05

Abstract excerpt

For many disease-causing virus species, global diversity is clustered into a taxonomy of subtypes with clinical significance. In particular, the classification of infections among the subtypes of human immunodeficiency virus type 1 (HIV-1) is a routine component of clinical management, and there are now many classification algorithms available for this purpose. Although several of these algorithms are similar in a...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: eaeba8a6-23c3-51d4-a64c-d18fb6315f94
DOI: 10.1101/362780

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

An open-source <i>k</i> -mer based machine learning tool for fast and accurate subtyping of HIV-1 genomesDOI 10.1101/362780Read

KmerSignificance Score: A discriminative and biologically-informed framework for viral <i>k</i> -mer prioritizationSemantic proximity Read

Short k-mer Abundance Profiles Yield Robust Machine Learning Features and Accurate Classifiers for RNA VirusesSemantic proximity Read

Short k-mer abundance profiles yield robust machine learning features and accurate classifiers for RNA virusesSemantic proximity Read

CASTOR: A machine learning platform for reproducible viral genome classificationSemantic proximity Read

Comparative Study of Encoded and Alignment-Based Methods for Virus Taxonomy ClassificationSemantic proximity Read

GREAC: An Open-source software for Genome Region Extraction and ClassificationSemantic proximity Read

A Computational Toolset for Rapid Identification of SARS-CoV-2, other Viruses, and Microorganisms from Sequencing DataSemantic proximity Read

AYUKA: A toolkit for fast viral genotyping using whole genome sequencingSemantic proximity Read

A novel alignment-free method for HIV-1 subtype classification.Semantic proximity Read

VAPiD: a lightweight cross-platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBankSemantic proximity Read

An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1Semantic proximity Read

VAPiD: a lightweight cross platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBankSemantic proximity Read