Article

Natural language-based representation and modeling of RBP binding

2026-02-08

Abstract excerpt

RNA-binding proteins (RBPs) are critical regulators of the human transcriptome, but the binding patterns of most RBPs are insufficiently characterized. While sequence context facilitates RBP binding specificity, its precise contribution remains unclear. Existing computational methods to decipher RBP binding patterns are limited by their architecture-dependence, challenging interpretability, and, importantly, lack...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: a52d3284-74f9-5a24-8409-96db419f676d
DOI: 10.64898/2026.02.05.704032

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Natural language-based representation and modeling of RBP bindingDOI 10.64898/2026.02.05.704032Read

A linguistics-based algorithm for RBP motif and context discoverySemantic proximity Read

AIRBP: Accurate identification of RNA-binding proteins using machine learning techniquesSemantic proximity Read

Decoding the RNA binding systems by UltraGenSemantic proximity Read

HydRA: Deep-learning models for predicting RNA-binding capacity from protein interaction association context and protein sequenceSemantic proximity Read

Reconstructing the sequence specificities of RNA-binding proteins across eukaryotesSemantic proximity Read

Deciphering 3’ UTR mediated gene regulation using interpretable deep representation learningSemantic proximity Read

DeepLocRNA: An Interpretable Deep Learning Model for Predicting RNA Subcellular Localization with domain-specific transfer-learningSemantic proximity Read

A foundation language model to decipher diverse regulation of RNAsSemantic proximity Read

CoBRA: Compound Binding Site Prediction using RNA Language ModelSemantic proximity Read

nearBynding: A flexible pipeline characterizing protein binding to local RNA structureSemantic proximity Read

RNAsamba: coding potential assessment using ORF and whole transcript sequence informationSemantic proximity Read

DeepCLIP: Predicting the effect of mutations on protein-RNA binding with Deep LearningSemantic proximity Read