Article

RNAsamba: coding potential assessment using ORF and whole transcript sequence information

2019-04-28

Abstract excerpt

<h4>Motivation</h4> The advent of high-throughput sequencing technologies made it possible to obtain large volumes of genetic information, quickly and inexpensively. Thus, many efforts are devoted to unveil the biological roles of genomic elements, being one of the main tasks the identification of protein-coding and long non-coding RNAs. <h4>Results</h4> We describe RNAsamba, a tool to predict the coding potenti...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 7a836f72-e54f-5748-9088-eacc5e202284
DOI: 10.1101/620880

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

RNAsamba: coding potential assessment using ORF and whole transcript sequence informationDOI 10.1101/620880Read

Deep learning predicts non-coding RNA functions from only raw sequence dataSemantic proximity Read

CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine.Semantic proximity Read

Investigating Open Reading Frames in Known and Novel Transcripts using ORFanageSemantic proximity Read

ORFhunteR: an accurate approach for the automatic identification and annotation of open reading frames in human mRNA moleculesSemantic proximity Read

LncRNA-BERT: An RNA Language Model for Classifying Coding and Long Non-Coding RNASemantic proximity Read

Computational Approaches to Functionally Annotate Long Noncoding RNA (lncRNA)Semantic proximity Read

CLASS: Accurate and Efficient Splice Variant Annotation from RNA-seq ReadsSemantic proximity Read

<i>SplAdder</i> : Identification, quantification and testing of alternative splicing events from RNA-Seq dataSemantic proximity Read

IsoTools – a ﬂexible workﬂow for long-read transcriptome sequencing analysisSemantic proximity Read

Diving deeper to predict noncoding sequence function.Semantic proximity Read

Genome biology of long non-coding RNAs in humans: a virtual karyotypeSemantic proximity Read

Magic-BLAST, an accurate DNA and RNA-seq aligner for long and short readsSemantic proximity Read