Article

rPinecone: Define sub-lineages of a clonal expansion via a phylogenetic tree

2018-08-31

Abstract excerpt

<h4>ABSTRACT</h4> The ability to distinguish between pathogens is a fundamental requirement to understand the epidemiology of infectious diseases. Phylogenetic analysis of genomic data can provide a powerful platform to identify lineages within bacterial populations, and thus inform outbreak investigation and transmission dynamics. However, resolving differences between pathogens associated with low variant (LV)...

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Literature Corpus work: 9f3b6383-6201-545d-8df9-d06d7848ee70
DOI: 10.1101/404624

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