Article

Persistent hindrances to data re-use in single-cell genomics

2025-10-03

Abstract excerpt

We report on our experience attempting to re-use published and publicly available single-cell (or single-nucleus) RNA-sequencing studies (scRNA-seq) from the Gene Expression Omnibus (GEO). We screened GEO for human, mouse and rat scRNA-seq studies as potential candidates for inclusion in the Gemma database of re-annotated and re-analyzed transcriptome studies. Using semi-automated and manual curation, we assessed...

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Identifiers and source

Literature Corpus work: 85af3dd1-ac7b-539b-9323-f57c479d8c48
DOI: 10.1101/2025.10.02.680150

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