Back to search

Article

Mouse Brain Extractor: Brain segmentation of mouse MRI using global positional encoding and SwinUNETR

2024-09-08

Abstract excerpt

In spite of the great progress that has been made towards automating brain extraction in human magnetic resonance imaging (MRI), challenges remain in the automation of this task for mouse models of brain disorders. Researchers often resort to editing brain segmentation results manually when automated methods fail to produce accurate delineations. However, manual corrections can be labor-intensive and introduce int...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work
7a3aea03-ee1f-5535-b1f4-6b1bd7acb3e8
DOI
10.1101/2024.09.03.611106
Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest
Interactive article relationship graphSelect a related publication card to move it into the centre and load its closest explainable connections. Solid lines are source-backed structured connections. Dashed lines are semantic discovery signals and are not scientific evidence.
Mouse Brain Extractor: Brain segmentation of mouse MRI using global positional encoding and SwinUNETRDOI 10.1101/2024.09.03.611106
MortX: A Domain Generalization Benchmark for Mouse Cortex Segmentation and RegistrationSemantic proximity
Quantitative mouse brain phenotyping based on single and multispectral MR protocols.Semantic proximity
DEEP LEARNING ENABLED MULTI-ORGAN SEGMENTATION OF MOUSE EMBRYOSSemantic proximity
A generalizable brain extraction net (BEN) for multimodal MRI data from rodents, nonhuman primates, and humansSemantic proximity
A Supervised, Symmetry-Driven, GUI Toolkit for Mouse Brain Stack Registration and Plane AssignmentSemantic proximity
TransBrain: a computational framework for translating brain-wide phenotypes between humans and mice.Semantic proximity
TransBrain: A computational framework for translating brain-wide phenotypes between humans and miceSemantic proximity
Heritability of the Mouse Brain ConnectomeSemantic proximity
An Optimized Registration Workflow and Standard Geometric Space for Small Animal Brain ImagingSemantic proximity
The ANTsX Ecosystem for Mapping the Mouse BrainSemantic proximity
Translating Brain Anatomy and Disease from Mouse to Human in Latent Gene Expression SpaceSemantic proximity
Brain Registration and Evaluation for Zebrafish (BREEZE)-mapping: A pipeline for whole-brain structural and activity analyses.Semantic proximity
Select a neighboring publication to make it the new centre.