Article

A Supervised, Symmetry-Driven, GUI Toolkit for Mouse Brain Stack Registration and Plane Assignment

2019-09-25

Abstract excerpt

Immunostaining of brain slices is a ubiquitous technique used throughout neuroscience for the purposes of understanding the anatomical and molecular characteristics of brain circuits. Yet the variety of distortions introduced, and the manual nature of the preparation, hinder the use of the generated images from being rigorously quantified; instead most registration of brain slices is done laboriously by hand. Exis...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 4e0488b7-6242-543e-bfc6-d858d1fdcfb0
DOI: 10.1101/781880

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

A Supervised, Symmetry-Driven, GUI Toolkit for Mouse Brain Stack Registration and Plane AssignmentDOI 10.1101/781880Read

The ANTsX Ecosystem for Mapping the Mouse BrainSemantic proximity Read

An Optimized Registration Workflow and Standard Geometric Space for Small Animal Brain ImagingSemantic proximity Read

A curvilinear coordinate flatmap for visualizing hippocampal structure and developmentSemantic proximity Read

ROIMAPer: An Open-Source Framework for Rapid and Accurate Atlas-Based Registration of Individual Brain Images in FIJISemantic proximity Read

Mouse Brain Extractor: Brain segmentation of mouse MRI using global positional encoding and SwinUNETRSemantic proximity Read

Precise MRI-Histology Coregistration of Paraffin-Embedded Tissue with Blockface ImagingSemantic proximity Read

High-throughput morphologic phenotyping of the mouse brain with magnetic resonance histology.Semantic proximity Read

LAMA: Automated image analysis for developmental phenotyping of mouse embryosSemantic proximity Read

A next-generation, histological atlas of the human brain and its application to automated brain MRI segmentationSemantic proximity Read

DEEP LEARNING ENABLED MULTI-ORGAN SEGMENTATION OF MOUSE EMBRYOSSemantic proximity Read

Geometric influences on the regional organization of the mammalian brainSemantic proximity Read

4D atlas of the mouse embryo for precise morphological staging.Semantic proximity Read