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The single-species metagenome: subtyping <i>Staphylococcus aureus</i> core genome sequences from shotgun metagenomic data

2015-11-05

Abstract excerpt

Metagenome shotgun sequence projects offer the potential for large scale biogeographic analysis of microbial species. In this project we developed a method for detecting 33 common subtypes of the pathogenic bacterium Staphylococcus aureus. We used a binomial mixture model implemented in the binstrain software and the coverage counts at > 100,000 known S. aureus SNP (single nucleotide polymorphism) sites derived...

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Literature Corpus work
75438d6b-56cf-5976-80b9-2eb3405f8db5
DOI
10.1101/030692
Open publication

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The single-species metagenome: subtyping <i>Staphylococcus aureus</i> core genome sequences from shotgun metagenomic dataDOI 10.1101/030692
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