Article

Rapid and accurate SNP genotyping of clonal bacterial pathogens with BioHansel

2020-01-11

Abstract excerpt

BioHansel performs high-resolution genotyping of bacterial isolates by identifying phylogenetically informative single nucleotide polymorphisms (SNPs), also known as canonical SNPs, in whole genome sequencing (WGS) data. The application uses a fast k -mer matching algorithm to map pathogen WGS data to canonical SNPs contained in hierarchically structured schemas and assigns genotypes based on the detected SNP pro...

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Literature Corpus work: 60dba12d-c4bd-5535-954a-9dcba5fec2c9
DOI: 10.1101/2020.01.10.902056

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