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CanSNPer: a hierarchical genotype classifier of clonal pathogens.

Bioinformatics (Oxford, England) - 15 Jun 2014

Lärkeryd Adrian, Myrtennäs Kerstin, Karlsson Edvin, Dwibedi Chinmay Kumar, Forsman Mats, Larsson Pär, Johansson Anders, Sjödin Andreas

Abstract excerpt

SUMMARY: Advances in typing methodologies have recently reformed the field of molecular epidemiology of pathogens. The falling cost of sequencing technologies is creating a deluge of whole genome sequencing data that burdens bioinformatics resources and tool development. In particular, single nucleotide polymorphisms in core genomes of pathogens are recognized as the most important markers for inferring genetic...

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PMID: 24574113
DOI: 10.1093/bioinformatics/btu113

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

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