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varVAMP: automated pan-specific primer design for tiled full genome sequencing and qPCR of highly diverse viral pathogens

2024-05-09

Abstract excerpt

<h4>ABSTRACT</h4> Time- and cost-saving surveillance of viral pathogens is achieved by tiled sequencing in which a viral genome is amplified in overlapping PCR amplicons and qPCR. However, designing pan-specific primers for viral pathogens that have high genomic variability represents a major challenge. Here, we present a bioinformatics command-line tool, called varVAMP ( var iable v irus amp licons). It relie...

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Literature Corpus work: 6029aadd-3179-5fbc-9e72-778ef0c513b6
DOI: 10.1101/2024.05.08.593102

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