The TaxUMAP atlas: efficient display of large clinical microbiome data reveals ecological competition involved in protection against bacteremia

Abstract excerpt

<h4>SUMMARY</h4> The microbiome is associated with health and disease, but causal effects are hard to quantify— especially in humans where controlled experiments are nearly impossible. Akin to natural experiments, closely monitored patients offer an alternative to characterize microbiome effects. We present TaxUMAP, a taxonomically-informed visualization method to effectively display diverse microbiome states. Ta...

Topics

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• Data Mining
• Datasets as Topic
• Environmental Microbiology
• Gut microbiota and health
• Internet
• Microbiota
• Systems Biology
• User-Computer Interface

Identifiers and source

Literature Corpus work

3bff65ab-abe8-5bca-b4a2-731f79e0948f

DOI

10.1101/2022.09.27.509746