Article

chromperiod: a Python package for detecting periodic chromatin organization from consecutive accessibility peaks

2026-05-15

Abstract excerpt

<title>Abstract</title> <p>Periodic organization of chromatin at the multi-megabase scale is a fundamental but undercharacterized feature of interphase chromosome architecture. Detecting this periodicity from standard chromatin accessibility data is complicated by the strong genomic autocorrelation introduced by the uneven distribution of accessible sites along chromosomes: gene-rich regions are dense in peaks wh...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 2a195596-95bb-5fba-a209-cb6a7e46b838
DOI: 10.21203/rs.3.rs-9679176/v2

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

chromperiod: a Python package for detecting periodic chromatin organization from consecutive accessibility peaksDOI 10.21203/rs.3.rs-9679176/v2Read

chromperiod: a Python package for detecting periodic chromatin organization from consecutive accessibility peaksSemantic proximity Read

A scaling law of periodic radial geometry organises eukaryotic chromosomesSemantic proximity Read

Joint decomposition of Hi-C maps reveals salient features of genome architecture across tissues and developmentSemantic proximity Read

A wavelet-based approach generates quantitative, scale-free and hierarchical descriptions of 3D genome structures and new biological insightsSemantic proximity Read

Learning quality scores for chromatin accessibility bigWig tracks using Machine LearningSemantic proximity Read

Genome-wide Statistical and Machine Learning Analysis of Long-Range Sequence Memory Across Human Chromosomes 1, 2, and 22Semantic proximity Read

CIRCUST: a novel methodology for temporal order reconstruction of molecular rhythms; validation and application towards a daily rhythm gene expression atlas in humansSemantic proximity Read

VECTOR: A Framework to Identify and Quantify Structural Changes in Chromatin using Hi-C DataSemantic proximity Read

CoPhaser: generic modeling of biological cycles in scRNA-seq with context-dependent periodic manifoldsSemantic proximity Read

Inference of Genomic Landscapes using Ordered Hidden Markov Models with Emission Densities (oHMMed)Semantic proximity Read

A population-based human enCYCLOPedia for circadian medicineSemantic proximity Read

Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regionsSemantic proximity Read