Article

Gene set enrichment analysis for genome-wide DNA methylation data

2020-08-25

Abstract excerpt

DNA methylation is one of the most commonly studied epigenetic marks, due to its role in disease and development. Illumina methylation arrays have been extensively used to measure methylation across the human genome. Methylation array analysis has primarily focused on preprocessing, normalisation and identification of differentially methylated CpGs and regions. GOmeth and GOregion are new methods for performing un...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 2827f0b8-61b1-5a91-a04d-0e2e04e7f083
DOI: 10.1101/2020.08.24.265702

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Gene set enrichment analysis for genome-wide DNA methylation dataDOI 10.1101/2020.08.24.265702Read

A cross-package Bioconductor workflow for analysing methylation array dataSemantic proximity Read

A cross-package Bioconductor workflow for analysing methylation array dataSemantic proximity Read

MAGI: Methylation analysis using genome information.Semantic proximity Read

DAMEfinder: A method to detect differential allele-specific methylationSemantic proximity Read

DAMEfinder: a method to detect differential allele-specific methylation.Semantic proximity Read

RaMWAS: fast methylome-wide association study pipeline for enrichment platforms.Semantic proximity Read

GeneDMRs: an R package for Gene-based Differentially Methylated Regions analysisSemantic proximity Read

EMImR: a Shiny Application for Identifying Transcriptomic and Epigenomic ChangesSemantic proximity Read

DeepMethylation: A deep learning framework for tissue-specific DNA methylation prediction and functional variant annotation.Semantic proximity Read

MIGS: Methylation Interpolated Gene Signatures Determine Associations Between Differential Methylation and Gene ExpressionSemantic proximity Read

Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeRSemantic proximity Read

Gowinda: unbiased analysis of gene set enrichment for genome-wide association studies.Semantic proximity Read