Article

Estimating disease spread using structured coalescent and birth-death models: A quantitative comparison

2020-11-30

Abstract excerpt

Understanding how disease transmission occurs between subpopulations is critically important for guiding disease control efforts irrespective of whether the subpopulations represent geographically separated people, age or risk groups. The structured coalescent (SC) and the multitype birth-death (MBD) model can both be used to infer migration rates between subpopulations from phylogenies reconstructed from pathogen...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 7add2dad-3b5f-52f1-a6bd-e3abf5b51738
DOI: 10.1101/2020.11.30.403741

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Estimating disease spread using structured coalescent and birth-death models: A quantitative comparisonDOI 10.1101/2020.11.30.403741Read

Bayesian Inference of Pathogen Phylogeography using the Structured Coalescent ModelSemantic proximity Read

Phylodynamic Inference for Structured Epidemiological ModelsSemantic proximity Read

Inferring time-dependent migration and coalescence patterns from genetic sequence and predictor data in structured populationsSemantic proximity Read

Approaches and challenges to inferring the geographical source of infectious disease outbreaks using genomic dataSemantic proximity Read

The Structured Coalescent and its ApproximationsSemantic proximity Read

Estimating the reproduction number and transmission heterogeneity from the size distribution of clusters of identical pathogen sequencesSemantic proximity Read

Phylodynamic analysis to inform prevention efforts in mixed HIV epidemicsSemantic proximity Read

Developing methodologies and software for Bayesian inference of transmission trees from epidemiological and genetic dataSemantic proximity Read

A computationally tractable birth-death model that combines phylogenetic and epidemiological dataSemantic proximity Read

High-Resolution Epidemic Simulation Using Within-Host Infection and Contact DataSemantic proximity Read

Phylodynamics of Infectious Disease EpidemicsSemantic proximity Read

From patterns to predictions: A framework for the spatial epidemiology of wildlife diseasesSemantic proximity Read