rMAP-Candida: a modular Dockerized WDL/Cromwell workflow for reproducible Candida species typing, assembly-contiguity assessment, antifungal-resistance marker screening, and phylogenomic surveillance

Abstract excerpt

Background Candida spp. infections are an increasing public health concern, particularly in settings where laboratory mycology, genomic surveillance infrastructure, and antifungal susceptibility testing remain limited. Accurate species identification, reproducible assembly assessment, conservative genomic screening for antifungal-resistance markers, and interpretable phylogenomic outputs are essential for...

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