Article

cocci-call: a species-aware variant identification pipeline for<i>Coccidioides</i>spp. in genomic epidemiology

2025-01-14

Abstract excerpt

<h4>ABSTRACT</h4> Emerging fungal pathogens, such as Coccidioides , the causative agent of Valley fever, pose significant clinical and public health challenges. While advances in genomic epidemiology have enhanced our understanding of Coccidioides evolutionary history, the lack of standardized tools for variant identification makes it difficult to draw comparisons between studies. To address this gap, we developed...

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Literature Corpus work: b3f35b8f-edbf-5c69-ab52-6e0351dc3693
DOI: 10.1101/2025.01.14.25320518

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