Article
Comparing genomic variant identification protocols for Candida auris.
Microbial genomics - 1 Apr 2023
Li Xiao, Muñoz José F, Gade Lalitha, Argimon Silvia, Bougnoux Marie-Elisabeth, Bowers Jolene R, Chow Nancy A, Cuesta Isabel, Farrer Rhys A, Maufrais Corinne, Monroy-Nieto Juan, Pradhan Dibyabhaba, Uehling Jessie, Vu Duong, Yeats Corin A, Aanensen David M, d'Enfert Christophe, Engelthaler David M, Eyre David W, Fisher Matthew C, Hagen Ferry, Meyer Wieland, Singh Gagandeep, Alastruey-Izquierdo Ana, Litvintseva Anastasia P, Cuomo Christina A
Abstract excerpt
Genomic analyses are widely applied to epidemiological, population genetic and experimental studies of pathogenic fungi. A wide range of methods are employed to carry out these analyses, typically without including controls that gauge the accuracy of variant prediction. The importance of tracking outbreaks at a global scale has raised the urgency of establishing high-accuracy pipelines that generate consistent...
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