Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

SNPannotator: automated functional annotation of genetic variants and linked proxies.

Bioinformatics (Oxford, England) - 31 Aug 2026

Ani Alireza, Nolte Ilja M, Kamali Zoha, Snieder Harold, Vaez Ahmad

Abstract excerpt

SUMMARY: Genome-wide association studies (GWASs) have identified thousands of genetic variants associated with complex traits and diseases. However, explaining the mechanisms underlying phenotypic variation remains challenging. Here, we introduce SNPannotator, an automated post-GWAS analysis software package designed to streamline the interpretation of GWAS findings. Our pipeline implements a multi-step process...

Read the complete abstract on PubMed

Topics

Software
Genome-Wide Association Study
Quantitative Trait Loci
Linkage Disequilibrium
Polymorphism, Single Nucleotide
Humans

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Molecular Sequence Annotation

Genetic Variation

Source

Open in PubMed Open full text

Identifiers

PMID: 42635531
DOI: 10.1093/bioinformatics/btag603
PMCID: PMC13533565

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 23 Oct 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

SNPannotator: automated functional annotation of genetic variants and linked proxies.PMID 42635531Read ↗

SNPsnap: a Web-based tool for identification and annotation of matched SNPs.Semantic proximity Read ↗

SNPinfo: integrating GWAS and candidate gene information into functional SNP selection for genetic association studies.Semantic proximity Read ↗

GWASdb: a database for human genetic variants identified by genome-wide association studies.Semantic proximity Read ↗

Open Targets Genetics: systematic identification of trait-associated genes using large-scale genetics and functional genomics.Semantic proximity Read ↗

SNPLogic: an interactive single nucleotide polymorphism selection, annotation, and prioritization system.Semantic proximity Read ↗

A practical guide for the functional annotation of genetic variations using SNPnexus.Semantic proximity Read ↗

snpGeneSets: An R Package for Genome-Wide Study Annotation.Semantic proximity Read ↗

GWASdb v2: an update database for human genetic variants identified by genome-wide association studies.Semantic proximity Read ↗

Open Targets Genetics: An open approach to systematically prioritize causal variants and genes at all published human GWAS trait-associated lociSemantic proximity Read ↗

SNAP: a web-based tool for identification and annotation of proxy SNPs using HapMap.Semantic proximity Read ↗

snpXplorer: an interactive platform for haplotype-aware exploration and integrated annotation of GWAS dataSemantic proximity Read ↗

FunciSNP: an R/bioconductor tool integrating functional non-coding data sets with genetic association studies to identify candidate regulatory SNPs.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.