Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

SNPinfo: integrating GWAS and candidate gene information into functional SNP selection for genetic association studies.

Nucleic acids research - 1 Jul 2009

Xu Zongli, Taylor Jack A

Abstract excerpt

We have developed a set of web-based SNP selection tools (freely available at http://www.niehs.nih.gov/snpinfo) where investigators can specify genes or linkage regions and select SNPs based on GWAS results, linkage disequilibrium (LD), and predicted functional characteristics of both coding and non-coding SNPs. The algorithm uses GWAS SNP P-value data and finds all SNPs in high LD with GWAS SNPs, so that...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Genes
Share to Genome
Share to Internet

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to MicroRNAs

Share to Prostatic Neoplasms

Share to RNA Splice Sites

Share to Software

Share to Systems Integration

Source

Open in PubMed Open full text

Identifiers

PMID: 19417063
DOI: 10.1093/nar/gkp290
PMCID: PMC2703930

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

SNPinfo: integrating GWAS and candidate gene information into functional SNP selection for genetic association studies.PMID 19417063Read ↗

SNP Function Portal: a web database for exploring the function implication of SNP alleles.Semantic proximity Read ↗

GWASdb: a database for human genetic variants identified by genome-wide association studies.Semantic proximity Read ↗

SNPLogic: an interactive single nucleotide polymorphism selection, annotation, and prioritization system.Semantic proximity Read ↗

F-SNP: computationally predicted functional SNPs for disease association studies.Semantic proximity Read ↗

GWASdb v2: an update database for human genetic variants identified by genome-wide association studies.Semantic proximity Read ↗

The NHGRI-EBI GWAS Catalog, a curated resource of SNP-trait associationsSemantic proximity Read ↗

Bioinformatics tools for single nucleotide polymorphism discovery and analysis.Semantic proximity Read ↗

GRASP v2.0: an update on the Genome-Wide Repository of Associations between SNPs and phenotypes.Semantic proximity Read ↗

Performing post-genome-wide association study analysis: overview, challenges and recommendationsSemantic proximity Read ↗

Beyond GWASs: illuminating the dark road from association to function.Semantic proximity Read ↗

The NHGRI GWAS Catalog, a curated resource of SNP-trait associations.Semantic proximity Read ↗

<i>snpXplorer</i> : a web application to explore SNP-associations and annotate SNP-setsSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.