Article
AlleleMiner: a long-read pipeline for gene-wise de novo allele phasing and variant detection in diploid citrus cultivars.
DNA research : an international journal for rapid publication of reports on genes and genomes - 3 Mar 2026
Kiryu Yukinari, Kawahara Yoshihiro, Endo Tomoko, Horiike Tokumasa, Shirasawa Kenta, Isobe Sachiko, Shimada Takehiko, Fujii Hiroshi
Abstract excerpt
Allelic variation is a critical determinant of agronomic traits in heterozygous crops. Most existing approaches define variation as reference-anchored differences, such as SNPs or structural variants, confining allelic diversity to variant feature coordinates. Here, we present AlleleMiner, a Python-based pipeline that phases diploid gene sequences directly from PacBio HiFi reads. Rather than relying on...
Read the complete abstract on PubMedTopics
Share this publication in a Topic to start or enrich a Post.