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Article

Haplotype-resolved genome assembly of Ficus carica L. reveals allele-specific expression in the fruit.

The Plant journal : for cell and molecular biology - 1 Feb 2025

Usai Gabriele, Giordani Tommaso, Vangelisti Alberto, Castellacci Marco, Simoni Samuel, Bosi Emanuele, Natali Lucia, Mascagni Flavia, Cavallini Andrea

Abstract excerpt

In this study, we produced a haplotype-phased genome sequence of the fig tree (Ficus carica L.), a non-Rosaceae fruit tree model species, providing a systematic overview of the organization of a heterozygous diploid genome and, for the first time in a fruit tree, evidence of allelic expression direction-shifting among haplotypes. The genome was used for whole genome analysis of heterozygosis, allelic cytosine...

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PMID: 39994925
DOI: 10.1111/tpj.70012
PMCID: PMC11850962

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