Article
Oncopacket: integration of cancer research data using GA4GH phenopackets.
Bioinformatics (Oxford, England) - 2 Oct 2025
Sierk Michael, Danis Daniel, Patil Sujay, Kishor Nobal, Mondal Rajdeep, Jha Abhishek, Chen Qingrong, Yan Chunhua, Munoz-Torres Monica, Meerzaman Daoud, Robinson Peter N, Reese Justin T
Abstract excerpt
SUMMARY: Lack of data integration remains a significant impediment to cancer research, and many analyses still require customized software to transform and prepare cancer data. We describe a software package to harmonize genetic and clinical cancer data into the GA4GH Phenopacket schema, an ISO standard for representing clinical case data. We integrated demographic, mutation, morphology, diagnosis, intervention,...
Read the complete abstract on PubMedTopics
- Humans
- Software
- Neoplasms
- Mutation
- Computational Biology
- Isocitrate Dehydrogenase