Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

A comprehensive atlas of full-length Arabidopsis eccDNA populations identifies their genomic origins and epigenetic regulation.

PLoS biology - 1 Jul 2025

Zaidi Syed Shan-E-Ali, Shakir Sara, De Kort Hanne, Mehta Devang, Nguyen Vu, Gutzat Ruben, Vanderschuren Hervé

Abstract excerpt

Extrachromosomal circular DNA (eccDNA) has been described in several eukaryotic species and has been shown to impact phenomena as diverse as cancer and herbicide tolerance. EccDNA is thought to arise mainly through transposable element (TE) mobilization. Because studies based on short-read sequencing cannot efficiently identify full-length eccDNA forms generated from TEs, we employed the CIDER-Seq pipeline based...

Read the complete abstract on PubMed

Topics

Arabidopsis
Epigenesis, Genetic
DNA Transposable Elements
DNA Methylation
Genome, Plant
DNA, Plant

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Arabidopsis Proteins

Gene Expression Regulation, Plant

Mutation

Nuclear Proteins

Source

Open in PubMed Open full text

Identifiers

PMID: 40663590
DOI: 10.1371/journal.pbio.3003275
PMCID: PMC12273906

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 25 Oct 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

A comprehensive atlas of full-length Arabidopsis eccDNA populations identifies their genomic origins and epigenetic regulation.PMID 40663590Read ↗

ecc_finder: A Robust and Accurate Tool for Detecting Extrachromosomal Circular DNA From Sequencing DataSemantic proximity Read ↗

Somatic mobility of transposons is explosive and shaped by distinct integration biases in <i>Arabidopsis thaliana</i>Semantic proximity Read ↗

A DNA break-5mC cycle activates transposable elements in Arabidopsis.Semantic proximity Read ↗

Natural Diversity of Heat-Induced Transcription of Retrotransposons in Arabidopsis thaliana.Semantic proximity Read ↗

Cas9-targeted Nanopore sequencing rapidly elucidates the transposition preferences and DNA methylation profiles of mobile elements in plantsSemantic proximity Read ↗

DDM1 guards against telomere truncation in Arabidopsis.Semantic proximity Read ↗

eccDB: a comprehensive repository for eccDNA-mediated chromatin contacts in multi-speciesSemantic proximity Read ↗

Highly integrated single-base resolution maps of the epigenome in Arabidopsis.Semantic proximity Read ↗

Mobile small RNAs regulate genome-wide DNA methylation.Semantic proximity Read ↗

The Position and Complex Genomic Architecture of Plant T-DNA Insertions Revealed by 4SEE.Semantic proximity Read ↗

Transmission of epi-alleles with MET1-dependent dense methylation in Arabidopsis thaliana.Semantic proximity Read ↗

DEMETER DNA demethylase reshapes the global DNA methylation landscape and controls cell identity transition during plant regeneration.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.