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Incorporating Epidemiological Data into the Genomic Analysis of Partially Sampled Infectious Disease Outbreaks

1 Apr 2025

Abstract excerpt

Pathogen genomic data are increasingly being used to investigate transmission dynamics in infectious disease outbreaks. Combining genomic data with epidemiological data should substantially increase our understanding of outbreaks, but this is highly challenging when the outbreak under study is only partially sampled, so that both genomic and epidemiological data are missing for intermediate links in the...

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PMID: 40256930
DOI: 10.1093/molbev/msaf083

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