Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Comparisons of genome assembly tools for characterization of Mycobacterium tuberculosis genomes using hybrid sequencing technologies.

PeerJ - 1 Jan 2024

Trisakul Kanwara, Hinwan Yothin, Eisiri Jukgarin, Salao Kanin, Chaiprasert Angkana, Kamolwat Phalin, Tongsima Sissades, Campino Susana, Phelan Jody, Clark Taane G, Faksri Kiatichai

Abstract excerpt

Background: Next-generation sequencing of Mycobacterium tuberculosis, the infectious agent causing tuberculosis, is improving the understanding of genomic diversity of circulating lineages and strain-types, and informing knowledge of drug resistance mutations. An increasingly popular approach to characterizing M. tuberculosis genomes (size: 4.4 Mbp) and variants (e.g., single nucleotide polymorphisms (SNPs))...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Genome, Bacterial
Share to High-Throughput Nucleotide Sequencing

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Mycobacterium tuberculosis

Share to Polymorphism, Single Nucleotide

Share to Sequence Analysis, DNA

Source

Open in PubMed Open full text

Identifiers

PMID: 39221271
DOI: 10.7717/peerj.17964
PMCID: PMC11366230

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Comparisons of genome assembly tools for characterization of Mycobacterium tuberculosis genomes using hybrid sequencing technologies.PMID 39221271Read ↗

Defining the <i>Mycobacterium tuberculosis</i> Pangenome and Suggestions for a New Composite Reference SequenceSemantic proximity Read ↗

Long-read sequencing of <i>Mycobacterial tuberculosis</i> is comparable to short-read sequencing for antimicrobial resistance prediction and epidemiological studiesSemantic proximity Read ↗

Portable sequencing of Mycobacterium tuberculosis for clinical and epidemiological applicationsSemantic proximity Read ↗

Evaluation of Nanopore sequencing for Mycobacterium tuberculosis drug susceptibility testing and outbreak investigation: a genomic analysisSemantic proximity Read ↗

Comparative whole-genome analysis of clinical isolates reveals characteristic architecture of Mycobacterium tuberculosis pangenome.Semantic proximity Read ↗

Evaluation of whole-genome sequence data analysis approaches for short- and long-read sequencing of Mycobacterium tuberculosisSemantic proximity Read ↗

The MAGMA pipeline for comprehensive genomic analyses of clinical Mycobacterium tuberculosis samplesSemantic proximity Read ↗

A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and In Silico Approaches.Semantic proximity Read ↗

Multi-platform whole genome sequencing for tuberculosis clinical and surveillance applicationsSemantic proximity Read ↗

Genome graphs reveal the importance of structural variation in <i>Mycobacterium tuberculosis</i> evolution and drug resistanceSemantic proximity Read ↗

Multi-platform whole genome sequencing for tuberculosis clinical and surveillance applicationsSemantic proximity Read ↗

Genomic Sequencing from Sputum for Tuberculosis Disease Diagnosis, Lineage Determination and Drug Susceptibility PredictionSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.