Average Nucleotide Identity and Digital DNA-DNA Hybridization Analysis Following PromethION Nanopore-Based Whole Genome Sequencing Allows for Accurate Prokaryotic Typing

Abstract excerpt

Whole-genome sequencing (WGS) is revolutionizing clinical bacteriology. However, bacterial typing remains investigated by reference techniques with inherent limitations. This stresses the need for alternative methods providing robust and accurate sequence type (ST) classification. This study optimized and evaluated a GridION nanopore sequencing protocol, adapted for the PromethION platform. Forty-eight...

Topics

Share this publication in a Topic to start or enrich a Post.

• Share to Bacterial Identification and Susceptibility Testing
• Share to Genomics and Phylogenetic Studies
• Share to Mycobacterium research and diagnosis