Evaluation of Oxford nanopore sequencing for antimicrobial resistance surveillance in Salmonella: comparison with phenotypic antimicrobial susceptibility in a large-scale study.

doi:10.1128/spectrum.01797-26

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Article

Evaluation of Oxford nanopore sequencing for antimicrobial resistance surveillance in Salmonella: comparison with phenotypic antimicrobial susceptibility in a large-scale study.

Microbiology spectrum - 1 Sept 2026

Hong Yu-Ping, Liao Ying-Shu, Wang You-Wun, Kuo Shao-Chun, Teng Ru-Hsiou, Liang Shiu-Yun, Chang Jui-Hsien, Wei Hsiao Lun, Chiou Chien-Shun

Abstract excerpt

Salmonella is a major zoonotic foodborne pathogen, and antimicrobial resistance (AMR) in Salmonella presents a significant public health challenge. Compared with conventional antimicrobial susceptibility testing (AST), whole-genome sequencing (WGS) provides a more rapid and comprehensive approach to AMR characterization, thereby informing antimicrobial selection and supporting public health surveillance. In this...

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Topics

Microbial Sensitivity Tests
Anti-Bacterial Agents
Salmonella
Whole Genome Sequencing
Salmonella Infections

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Nanopore Sequencing

Drug Resistance, Bacterial

Phenotype

Taiwan

Humans

Genotype

Third Generation Cephalosporins

Drug Resistance, Multiple, Bacterial

Genome, Bacterial

Source

Open in PubMed Open full text

Identifiers

PMID: 42584076
DOI: 10.1128/spectrum.01797-26
PMCID: PMC13532270

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