Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Genotyping-by-sequencing targets genic regions and improves resolution of genome-wide association studies in autotetraploid potato.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik - 9 Jul 2024

Sharma Sanjeev Kumar, McLean Karen, Hedley Peter E, Dale Finlay, Daniels Steve, Bryan Glenn J

Abstract excerpt

KEY MESSAGE: De novo genotyping in potato using methylation-sensitive GBS discovers SNPs largely confined to genic or gene-associated regions and displays enhanced effectiveness in estimating LD decay rates, population structure and detecting GWAS associations over 'fixed' SNP genotyping platform. Study also reports the genetic architectures including robust sequence-tagged marker-trait associations for sixteen...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Genetic Association Studies
Share to Genome, Plant

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genome-Wide Association Study

Share to Genotyping Techniques

Share to Linkage Disequilibrium

Share to Quantitative Trait Loci

Share to Solanum tuberosum

Share to Tetraploidy

Source

Open in PubMed Open full text

Identifiers

PMID: 38980417
DOI: 10.1007/s00122-024-04651-8
PMCID: PMC11233353

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Genotyping-by-sequencing targets genic regions and improves resolution of genome-wide association studies in autotetraploid potato.PMID 38980417Read ↗

Targeted genotyping-by-sequencing of potato and data analysis with R/polyBreedR.Semantic proximity Read ↗

An Axiom SNP genotyping array for potato: development, evaluation and applicationsSemantic proximity Read ↗

A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato.Semantic proximity Read ↗

Haplotype-resolved genome analyses of a heterozygous diploid potato.Semantic proximity Read ↗

Linkage Disequilibrium and Evaluation of Genome-Wide Association Mapping Models in Tetraploid Potato.Semantic proximity Read ↗

Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar.Semantic proximity Read ↗

Genomic prediction of starch content and chipping quality in tetraploid potato using genotyping-by-sequencing.Semantic proximity Read ↗

Polyploid QTL-seq towards rapid development of tightly linked DNA markers for potato and sweetpotato breeding through whole-genome resequencing.Semantic proximity Read ↗

QTL discovery for agronomic and quality traits in diploid potato clones using PotatoMASH amplicon sequencing.Semantic proximity Read ↗

Leveraging a phased pangenome for haplotype design of hybrid potato.Semantic proximity Read ↗

Analysis of genetic diversity and population structure among cultivated potato clones from Korea and global breeding programs.Semantic proximity Read ↗

Exploring the potential and limitations of genotyping-by-sequencing for SNP discovery and genotyping in tetraploid potato.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.