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Article

fastlin: an ultra-fast program for Mycobacterium tuberculosis complex lineage typing.

Bioinformatics (Oxford, England) - 1 Nov 2023

Derelle Romain, Lees John, Phelan Jody, Lalvani Ajit, Arinaminpathy Nimalan, Chindelevitch Leonid

Abstract excerpt

SUMMARY: Fastlin is a bioinformatics tool designed for rapid Mycobacterium tuberculosis complex (MTBC) lineage typing. It utilizes an ultra-fast alignment-free approach to detect previously identified barcode single nucleotide polymorphisms associated with specific MTBC lineages. In a comprehensive benchmarking against existing tools, fastlin demonstrated high accuracy and significantly faster running times....

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PMID: 37871178
DOI: 10.1093/bioinformatics/btad648
PMCID: PMC10627351

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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