Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Dcifer: an IBD-based method to calculate genetic distance between polyclonal infections.

Genetics - 30 Sept 2022

Gerlovina Inna, Gerlovin Boris, Rodríguez-Barraquer Isabel, Greenhouse Bryan

Abstract excerpt

An essential step toward reconstructing pathogen transmission and answering epidemiologically relevant questions from genomic data is obtaining pairwise genetic distance between infections. For recombining organisms such as malaria parasites, relatedness measures quantifying recent shared ancestry would provide a meaningful distance, suggesting methods based on identity by descent (IBD). While the concept of...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Genomics
Share to Haplotypes
Share to Models, Genetic

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Polymorphism, Single Nucleotide

Source

Open in PubMed Open full text

Identifiers

PMID: 36000888
DOI: 10.1093/genetics/iyac126
PMCID: PMC9526043

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Dcifer: an IBD-based method to calculate genetic distance between polyclonal infections.PMID 36000888Read ↗

Identity-by-descent analyses for measuring population dynamics and selection in recombining pathogensSemantic proximity Read ↗

Identity-by-descent analyses for measuring population dynamics and selection in recombining pathogens.Semantic proximity Read ↗

Estimating Relatedness Between Malaria ParasitesSemantic proximity Read ↗

MalKinID: A Likelihood-Based Model for Identifying Malaria Parasite Genealogical Relationships Using Identity-by-DescentSemantic proximity Read ↗

Estimating relatedness between malaria parasitesSemantic proximity Read ↗

Quantifying connectivity between local Plasmodium falciparum malaria parasite populations using identity by descent.Semantic proximity Read ↗

A modular Bayesian framework for inferring transmission networks from polyclonal infections, with application to <i>Plasmodium falciparum</i>Semantic proximity Read ↗

COIL: a methodology for evaluating malarial complexity of infection using likelihood from single nucleotide polymorphism data.Semantic proximity Read ↗

Lineage-informative microhaplotypes for recurrence classification and spatio-temporal surveillance of Plasmodium vivax malaria parasites.Semantic proximity Read ↗

Resolving drug selection and migration in an inbred South American Plasmodium falciparum population with identity-by-descent analysisSemantic proximity Read ↗

Systematic bias in malaria parasite relatedness estimationSemantic proximity Read ↗

A network approach to analyzing highly recombinant malaria parasite genes.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.