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Assessing accuracy of genotype imputation in the Afrikaner and Brahman cattle breeds of South Africa.

Tropical animal health and production - 8 Feb 2022

Mdyogolo S, MacNeil M D, Neser F W C, Scholtz M M, Makgahlela M L

Abstract excerpt

Imputation may be used to rescue genomic data from animals that would otherwise be eliminated due to a lower than desired call rate. The aim of this study was to compare the accuracy of genotype imputation for Afrikaner, Brahman, and Brangus cattle of South Africa using within- and multiple-breed reference populations. A total of 373, 309, and 101 Afrikaner, Brahman, and Brangus cattle, respectively, were...

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PMID: 35133512
DOI: 10.1007/s11250-022-03102-0

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