Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Comparison of seven SNP calling pipelines for the next-generation sequencing data of chickens.

PloS one - 1 Jan 2022

Liu Jing, Shen Qingmiao, Bao Haigang

Abstract excerpt

Single nucleotide polymorphisms (SNPs) are widely used in genome-wide association studies and population genetics analyses. Next-generation sequencing (NGS) has become convenient, and many SNP-calling pipelines have been developed for human NGS data. We took advantage of a gap knowledge in selecting the appropriated SNP calling pipeline to handle with high-throughput NGS data. To fill this gap, we studied and...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Biomarkers
Share to Chickens
Share to Computational Biology

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genome-Wide Association Study

Share to Genotype

Share to High-Throughput Nucleotide Sequencing

Share to Polymorphism, Single Nucleotide

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 35100292
DOI: 10.1371/journal.pone.0262574
PMCID: PMC8803190

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Comparison of seven SNP calling pipelines for the next-generation sequencing data of chickens.PMID 35100292Read ↗

An Efficient Genotyping Method in Chicken Based on Genome Reducing and Sequencing.Semantic proximity Read ↗

Optimized double-digest genotyping by sequencing (ddGBS) method with high-density SNP markers and high genotyping accuracy for chickens.Semantic proximity Read ↗

High-throughput and Cost-effective Chicken Genotyping Using Next-Generation Sequencing.Semantic proximity Read ↗

The impact of sequencing depth and DP filtering on genotyping accuracy of SNP based on next-generation sequencing.Semantic proximity Read ↗

SNP discovery and genotyping using restriction-site-associated DNA sequencing in chickens.Semantic proximity Read ↗

Accuracy and efficiency of germline variant calling pipelines for human genome dataSemantic proximity Read ↗

Single nucleotide polymorphism analysis of Korean native chickens using next generation sequencing data.Semantic proximity Read ↗

Variant callers for next-generation sequencing data: a comparison study.Semantic proximity Read ↗

Development of High-Density SNP Markers for Evaluating Genetic Diversity and Population Structure in Pingwu Red ChickenSemantic proximity Read ↗

Comparing a few SNP calling algorithms using low-coverage sequencing data.Semantic proximity Read ↗

Comparison of calling pipelines for whole genome sequencing: an empirical study demonstrating the importance of mapping and alignment.Semantic proximity Read ↗

Genomic data for 78 chickens from 14 populations.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.