Article
Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity.
Molecular plant - 7 Mar 2022
Hoopes Genevieve, Meng Xiaoxi, Hamilton John P, Achakkagari Sai Reddy, de Alves Freitas Guesdes Fernanda, Bolger Marie E, Coombs Joseph J, Esselink Danny, Kaiser Natalie R, Kodde Linda, Kyriakidou Maria, Lavrijssen Brian, van Lieshout Natascha, Shereda Rachel, Tuttle Heather K, Vaillancourt Brieanne, Wood Joshua C, de Boer Jan M, Bornowski Nolan, Bourke Peter, Douches David, van Eck Herman J, Ellis Dave, Feldman Max J, Gardner Kyle M, Hopman Johannes C P, Jiang Jiming, De Jong Walter S, Kuhl Joseph C, Novy Richard G, Oome Stan, Sathuvalli Vidyasagar, Tan Ek Han, Ursum Remco A, Vales M Isabel, Vining Kelly, Visser Richard G F, Vossen Jack, Yencho G Craig, Anglin Noelle L, Bachem Christian W B, Endelman Jeffrey B, Shannon Laura M, Strömvik Martina V, Tai Helen H, Usadel Björn, Buell C Robin, Finkers Richard
Abstract excerpt
Cultivated potato is a clonally propagated autotetraploid species with a highly heterogeneous genome. Phased assemblies of six cultivars including two chromosome-scale phased genome assemblies revealed extensive allelic diversity, including altered coding and transcript sequences, preferential allele expression, and structural variation that collectively result in a highly complex transcriptome and predicted...
Read the complete abstract on PubMed