Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

COPLA, a taxonomic classifier of plasmids

31 Jul 2021

Abstract excerpt

BACKGROUND: Plasmids are mobile genetic elements, key in the dissemination of antibiotic resistance, virulence determinants and other adaptive traits in bacteria. Obtaining a robust method for plasmid classification is necessary to better understand the genetics and epidemiology of many pathogens. Until now, plasmid classification systems focused on specific traits, which limited their precision and universality....

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Antibiotic Resistance in Bacteria
Share to Antimicrobial Resistance in Staphylococcus
Share to Bacterial Identification and Susceptibility Testing

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Source

Identifiers

PMID: 34332528
DOI: 10.1186/s12859-021-04299-x

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 8 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

COPLA, a taxonomic classifier of plasmidsPMID 34332528Read ↗

PlasmidHunter: Accurate and fast prediction of plasmid sequences using gene content profile and machine learningSemantic proximity Read ↗

ACCIO: An Assembly-Based Tool Enabling Plasmid DetectionSemantic proximity Read ↗

Improved detection and classification of plasmids from circularized and fragmented assembliesSemantic proximity Read ↗

PlaScope: a targeted approach to assess the plasmidome of <i>Escherichia coli</i> strainsSemantic proximity Read ↗

Integrating theory and machine learning to reveal determinants of plasmid copy numberSemantic proximity Read ↗

The genetic and ecological landscape of plasmids in the human gutSemantic proximity Read ↗

Towards quantifying plasmid similarity.Semantic proximity Read ↗

Plasmid Detection, Characterization, and Ecology.Semantic proximity Read ↗

Platon: identification and characterization of bacterial plasmid contigs in short-read draft assemblies exploiting protein-sequence-based replicon distribution scoresSemantic proximity Read ↗

Circling in on plasmids: benchmarking plasmid detection and reconstruction tools for short-read data from diverse speciesSemantic proximity Read ↗

A One Health study of Klebsiella pneumoniae species complex plasmids shows a highly diverse and ecologically adaptable plasmidome.Semantic proximity Read ↗

A Peek into the Plasmidome of Global SewageSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.