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aScan: A Novel Method for the Study of Allele Specific Expression in Single Individuals.

Journal of molecular biology - 28 May 2021

Zambelli Federico, Chiara Matteo, Ferrandi Erika, Mandreoli Pietro, Tangaro Marco Antonio, Pavesi Giulio, Pesole Graziano

Abstract excerpt

In diploid organisms, two copies of each allele are normally inherited from parents. Paternal and maternal alleles can be regulated and expressed unequally, which is referred to as allele-specific expression (ASE). In this work, we present aScan, a novel method for the identification of ASE from the analysis of matched individual genomic and RNA sequencing data. By performing extensive analyses of both real and...

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Computer Simulation
Databases, Genetic
Gene Expression Regulation
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PMID: 33508309
DOI: 10.1016/j.jmb.2021.166829

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Click a neighbor to travelStep 1 · 12 closest

aScan: A Novel Method for the Study of Allele Specific Expression in Single Individuals.PMID 33508309Read ↗

A compendium of methods: Searching allele specific expression via RNA sequencing.Semantic proximity Read ↗

Genome-wide identification of allele-specific effects on gene expression for single and multiple individuals.Semantic proximity Read ↗

Highly accurate quantification of allelic gene expression for population and disease genetics.Semantic proximity Read ↗

A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals.Semantic proximity Read ↗

ASEP: gene-based detection of allele-specific expression in a population by RNA-seqSemantic proximity Read ↗

GeneiASE: Detection of condition-dependent and static allele-specific expression from RNA-seq data without haplotype information.Semantic proximity Read ↗

A haplotype-based normalization technique for the analysis and detection of allele specific expression.Semantic proximity Read ↗

AlleleSeq: analysis of allele-specific expression and binding in a network framework.Semantic proximity Read ↗

ASEQ: fast allele-specific studies from next-generation sequencing data.Semantic proximity Read ↗

PAC: Highly accurate quantification of allelic gene expression for population and disease geneticsSemantic proximity Read ↗

IDP-ASE: haplotyping and quantifying allele-specific expression at the gene and gene isoform level by hybrid sequencing.Semantic proximity Read ↗

ASEP: Gene-based detection of allele-specific expression across individuals in a population by RNA sequencing.Semantic proximity Read ↗

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