Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Evaluation of Rapid Library Preparation Protocols for Whole Genome Sequencing Based Outbreak Investigation

27 Aug 2019

Abstract excerpt

Whole genome sequencing (WGS) has become the new gold standard for bacterial outbreak investigation, due to the high resolution available for typing. While sequencing is currently predominantly performed on Illumina devices, the preceding library preparation can be performed using various protocols. Enzymatic fragmentation library preparation protocols are fast, have minimal hands-on time, and work with small...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Genomics and Phylogenetic Studies
Share to Mycobacterium research and diagnosis

Source

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Identifiers

PMID: 31508405
DOI: 10.3389/fpubh.2019.00241

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Evaluation of Rapid Library Preparation Protocols for Whole Genome Sequencing Based Outbreak InvestigationPMID 31508405Read ↗

Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates.Semantic proximity Read ↗

Evaluation of Oxford Nanopore Technologies workflows for genomic epidemiology of outbreak‐associated bacterial isolates in the clinical settingSemantic proximity Read ↗

Evaluation of Oxford Nanopore Technologies workflows for genomic epidemiology of outbreak-associated bacterial isolates in the clinical setting.Semantic proximity Read ↗

Automated whole genome sequencing platform for bacterial strain typing in clinical microbiology laboratoriesSemantic proximity Read ↗

Choice of library preparation affects sequence quality, genome assembly, and precise in silico prediction of virulence genes in shiga toxin-producing Escherichia coli.Semantic proximity Read ↗

Illuminating choices for library prep: a comparison of library preparation methods for whole genome sequencing of Cryptococcus neoformans using Illumina HiSeq.Semantic proximity Read ↗

Evaluation of methods for whole genome sequencing of <i>Enterococcus faecium</i> in a diagnostic laboratorySemantic proximity Read ↗

Survey on the Use of Whole-Genome Sequencing for Infectious Diseases Surveillance: Rapid Expansion of European National Capacities, 2015–2016Semantic proximity Read ↗

Validation and Implementation of CLIA-Compliant Whole Genome Sequencing (WGS) in Public Health LaboratorySemantic proximity Read ↗

Whole-Genome Sequencing and Genomic Mining of a Multidrug-Resistant Lactose-Fermenting Enterobacteriaceae Strain Isolated from a Nosocomial InfectionSemantic proximity Read ↗

A hybrid and poly-polish workflow for the complete and accurate assembly of phage genomes: a case study of ten przondovirusesSemantic proximity Read ↗

Comparing library preparation methods for SARS-CoV-2 multiplex amplicon sequencing on the Illumina MiSeq platformSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.