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Article

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes.

Genome biology - 1 Jan 2014

Treangen Todd J, Ondov Brian D, Koren Sergey, Phillippy Adam M

Abstract excerpt

Whole-genome sequences are now available for many microbial species and clades, however existing whole-genome alignment methods are limited in their ability to perform sequence comparisons of multiple sequences simultaneously. Here we present the Harvest suite of core-genome alignment and visualization tools for the rapid and simultaneous analysis of thousands of intraspecific microbial strains. Harvest includes...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 25410596
DOI: 10.1186/s13059-014-0524-x
PMCID: PMC4262987

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