Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods.

BMC bioinformatics - 8 May 2012

Francisco Alexandre P, Vaz Cátia, Monteiro Pedro T, Melo-Cristino José, Ramirez Mário, Carriço Joäo A

Abstract excerpt

BACKGROUND: With the decrease of DNA sequencing costs, sequence-based typing methods are rapidly becoming the gold standard for epidemiological surveillance. These methods provide reproducible and comparable results needed for a global scale bacterial population analysis, while retaining their usefulness for local epidemiological surveys. Online databases that collect the generated allelic profiles and associated...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Algorithms
Share to Minisatellite Repeats

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Multilocus Sequence Typing

Share to Phylogeny

Share to Polymorphism, Single Nucleotide

Share to Sequence Analysis, DNA

Share to Software

Share to Streptococcus pneumoniae

Source

Open in PubMed Open full text

Identifiers

PMID: 22568821
DOI: 10.1186/1471-2105-13-87
PMCID: PMC3403920

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods.PMID 22568821Read ↗

PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees.Semantic proximity Read ↗

PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods.Semantic proximity Read ↗

Pavian: Interactive analysis of metagenomics data for microbiomics and pathogen identificationSemantic proximity Read ↗

Publication-ready single nucleotide polymorphism visualization with snipit.Semantic proximity Read ↗

CoxBase: an Online Platform for Epidemiological Surveillance, Visualization, Analysis, and Typing of Coxiella burnetii Genomic SequencesSemantic proximity Read ↗

Nextstrain: real-time tracking of pathogen evolutionSemantic proximity Read ↗

zAMP and zAMPExplorer: Reproducible Scalable Amplicon-based Metagenomics Analysis and VisualizationSemantic proximity Read ↗

CoxBase: an online platform for epidemiological surveillance, visualization, analysis and typing of <i>Coxiella burnetii</i> genomic sequencesSemantic proximity Read ↗

Combined visualization of genomic and epidemiological data for outbreaksSemantic proximity Read ↗

SVAMP: sequence variation analysis, maps and phylogeny.Semantic proximity Read ↗

Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG.Semantic proximity Read ↗

Phandango: an interactive viewer for bacterial population genomicsSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.