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Article

hmmIBD: software to infer pairwise identity by descent between haploid genotypes.

Malaria journal - 15 May 2018

Schaffner Stephen F, Taylor Aimee R, Wong Wesley, Wirth Dyann F, Neafsey Daniel E

Abstract excerpt

BACKGROUND: A number of recent malaria studies have used identity by descent (IBD) to study epidemiological processes relevant to malaria control. In this paper, a software package, hmmIBD, is introduced for estimating pairwise IBD between haploid genomes, such as those of the malaria parasite, sampled from one or two populations. Source code is freely available. METHODS: The performance of hmmIBD was verified...

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Identifiers

PMID: 29764422
DOI: 10.1186/s12936-018-2349-7
PMCID: PMC5952413

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

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