Article
Comparison of three assembly strategies for a heterozygous seedless grapevine genome assembly.
BMC genomics - 17 Jan 2018
Patel Sagar, Lu Zhixiu, Jin Xiaozhu, Swaminathan Padmapriya, Zeng Erliang, Fennell Anne Y
Abstract excerpt
BACKGROUND: De novo heterozygous assembly is an ongoing challenge requiring improved assembly approaches. In this study, three strategies were used to develop de novo Vitis vinifera 'Sultanina' genome assemblies for comparison with the inbred V. vinifera (PN40024 12X.v2) reference genome and a published Sultanina ALLPATHS-LG assembly (AP). The strategies were: 1) a default PLATANUS assembly (PLAT_d) for direct...
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