Article
Extracting genotype information of Arabidopsis thaliana recombinant inbred lines from transcript profiles established with high-density oligonucleotide arrays.
Plant cell reports - 1 Dec 2017
Schmidt Renate, Boudichevskaia Anastassia, Cao Hieu Xuan, He Sang, Meyer Rhonda Christiane, Reif Jochen Christoph
Abstract excerpt
KEY MESSAGE: Polymorphic probes identified via a sequence-based approach are suitable to infer the genotypes of recombinant inbred lines from hybridisation intensities of GeneChip ® transcript profiling experiments. The sequences of the probes of the ATH1 GeneChip® exactly match transcript sequences of the Arabidopsis thaliana reference genome Col-0, whereas nucleotide differences and/or insertions/deletions may...
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