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Article

HLAscan: genotyping of the HLA region using next-generation sequencing data.

BMC bioinformatics - 12 May 2017

Ka Sojeong, Lee Sunho, Hong Jonghee, Cho Yangrae, Sung Joohon, Kim Han-Na, Kim Hyung-Lae, Jung Jongsun

Abstract excerpt

BACKGROUND: Several recent studies showed that next-generation sequencing (NGS)-based human leukocyte antigen (HLA) typing is a feasible and promising technique for variant calling of highly polymorphic regions. To date, however, no method with sufficient read depth has completely solved the allele phasing issue. In this study, we developed a new method (HLAscan) for HLA genotyping using NGS data. RESULTS:...

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Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

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Identifiers

PMID: 28499414
DOI: 10.1186/s12859-017-1671-3
PMCID: PMC5427585

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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