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Article

Single nucleotide polymorphism discovery in bovine liver using RNA-seq technology.

PloS one - 1 Jan 2017

Pareek Chandra Shekhar, Błaszczyk Paweł, Dziuba Piotr, Czarnik Urszula, Fraser Leyland, Sobiech Przemysław, Pierzchała Mariusz, Feng Yaping, Kadarmideen Haja N, Kumar Dibyendu

Abstract excerpt

BACKGROUND: RNA-seq is a useful next-generation sequencing (NGS) technology that has been widely used to understand mammalian transcriptome architecture and function. In this study, a breed-specific RNA-seq experiment was utilized to detect putative single nucleotide polymorphisms (SNPs) in liver tissue of young bulls of the Polish Red, Polish Holstein-Friesian (HF) and Hereford breeds, and to understand the...

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Identifiers

PMID: 28234981
DOI: 10.1371/journal.pone.0172687
PMCID: PMC5325534

Genes

CARTPT
CCSER1
EGFR
GAD1
GDF5
GHR
GHRH
GHRL
GRB10
IGFBPL1
IGFL1
KCNIP4
LEP
LHX4
MSTN
MTSS1
NKAIN1
NSMCE2
PLAG1
TOX
UCP3

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