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cooccurNet: an R package for co-occurrence network construction and analysis.

Bioinformatics (Oxford, England) - 15 Jun 2017

Zou Yuanqiang, Wu Zhiqiang, Deng Lizong, Wu Aiping, Wu Fan, Li Kenli, Jiang Taijiao, Peng Yousong

Abstract excerpt

MOTIVATION: Previously, we developed a computational model to identify genomic co-occurrence networks that was applied to capture the coevolution patterns within genomes of influenza viruses. To facilitate easy public use of this model, an R package 'cooccurNet' is presented here. RESULTS: 'cooccurNet' includes functionalities of construction and analysis of residues (e.g. nucleotides, amino acids and SNPs)...

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PMID: 28174895
DOI: 10.1093/bioinformatics/btx062

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