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Article

Fast motif matching revisited: high-order PWMs, SNPs and indels.

Bioinformatics (Oxford, England) - 15 Feb 2017

Korhonen Janne H, Palin Kimmo, Taipale Jussi, Ukkonen Esko

Abstract excerpt

Motivation: While the position weight matrix (PWM) is the most popular model for sequence motifs, there is growing evidence of the usefulness of more advanced models such as first-order Markov representations, and such models are also becoming available in well-known motif databases. There has been lots of research of how to learn these models from training data but the problem of predicting putative sites of the...

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PMID: 28011774
DOI: 10.1093/bioinformatics/btw683

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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