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Article

Genotyping of herpes simplex virus type 1 by whole-genome sequencing.

The Journal of general virology - 1 Oct 2016

Pfaff Florian, Groth Marco, Sauerbrei Andreas, Zell Roland

Abstract excerpt

A previous phylogenetic analysis based on 32 full-length sequences of herpes simplex virus type 1 (HSV-1) suggested three major phylogenetic groups (phylogroups) with distinct geographic distribution: (1) western strains from Europe and North America, (2) isolates from Asia and one American strain and (3) isolates from Africa only. Here, we sequenced the genomes of additional 10 clinical HSV-1 isolates from...

Topics

Adolescent
Adult
Africa
Asia
Child
Child, Preschool
DNA, Viral
Europe
Female
Genome, Viral
Genotype
Herpes Simplex
Herpesvirus 1, Human

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Humans

Infant

Male

Phylogeny

Polymorphism, Genetic

Source

Identifiers

PMID: 27558891
DOI: 10.1099/jgv.0.000589

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 30 Aug 2026.

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