Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

PathScore: a web tool for identifying altered pathways in cancer data.

Bioinformatics (Oxford, England) - 1 Dec 2016

Gaffney Stephen G, Townsend Jeffrey P

Abstract excerpt

PathScore quantifies the level of enrichment of somatic mutations within curated pathways, applying a novel approach that identifies pathways enriched across patients. The application provides several user-friendly, interactive graphic interfaces for data exploration, including tools for comparing pathway effect sizes, significance, gene-set overlap and enrichment differences between projects. AVAILABILITY AND...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Algorithms
Share to Computational Biology
Share to Internet

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Metabolic Networks and Pathways

Share to Mutation

Share to Neoplasms

Share to Software

Source

Identifiers

PMID: 27503224
DOI: 10.1093/bioinformatics/btw512

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

PathScore: a web tool for identifying altered pathways in cancer data.PMID 27503224Read ↗

PathScore: a web tool for identifying altered pathways in cancer dataSemantic proximity Read ↗

An integrative somatic mutation analysis to identify pathways linked with survival outcomes across 19 cancer types.Semantic proximity Read ↗

An integrative somatic mutation analysis to identify pathways linked with survival outcomes across 19 cancer typesSemantic proximity Read ↗

PathScan: a tool for discerning mutational significance in groups of putative cancer genes.Semantic proximity Read ↗

OncoRisk: a state-of-the-art web server for bridging the oncogenic databases and pan-cancer cohorts to the translational oncology.Semantic proximity Read ↗

Path2Surv: Pathway/gene set-based survival analysis using multiple kernel learningSemantic proximity Read ↗

Integrative pathway enrichment analysis of multivariate omics dataSemantic proximity Read ↗

OncoRisk: A state-of-the-art Web Server for bridging the oncogenic databases and pan-cancer cohorts to the translational oncologySemantic proximity Read ↗

Understanding Genotype-Phenotype Effects in Cancer via Network Approaches.Semantic proximity Read ↗

Pathway-based personalized analysis of cancerSemantic proximity Read ↗

Identifying pathways affected by cancer mutations.Semantic proximity Read ↗

PICS: Pathway Informed Classification System for cancer analysis using gene expression dataSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.